Detailed information of SNP:
|
SNP ID:
sf0401343020(Gbrowse)
Chromosome: chr04 Position: 1343020 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 72.02% | 27.98% |
| All Indica | 766 | 80.55% | 19.45% |
| All Japonica | 464 | 55.60% | 44.40% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 358 | 79.33% | 20.67% |
| Indica II | 208 | 80.77% | 19.23% |
| Indica Intermediate | 200 | 82.50% | 17.50% |
| Temperate Japonica | 312 | 43.59% | 56.41% |
| Tropical Japonica | 89 | 85.39% | 14.61% |
| Japonica Intermediate | 63 | 73.02% | 26.98% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401343020 | G->A | LOC_Os04g03190(LOC_Os04g03190.1) | INTRON |