Detailed information of SNP:
|
SNP ID:
sf0401343758(Gbrowse)
Chromosome: chr04 Position: 1343758 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 79.40% | 20.60% |
| All Indica | 793 | 89.66% | 10.34% |
| All Japonica | 492 | 60.98% | 39.02% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 89.28% | 10.72% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 208 | 87.02% | 12.98% |
| Temperate Japonica | 332 | 51.51% | 48.49% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401343758 | T->C | LOC_Os04g03190(LOC_Os04g03190.1) | Synonymous |