Detailed information of SNP:
|
SNP ID:
sf0401344558(Gbrowse)
Chromosome: chr04 Position: 1344558 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 85.04% | 14.96% |
| All Indica | 799 | 96.37% | 3.63% |
| All Japonica | 496 | 65.12% | 34.88% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 58.98% | 41.02% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401344558 | A->G | LOC_Os04g03190(LOC_Os04g03190.1) | Non-Synonymous SNP |