Detailed information of SNP:
|
SNP ID:
sf0401353954(Gbrowse)
Chromosome: chr04 Position: 1353954 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 68.64% | 31.36% |
| All Indica | 784 | 46.68% | 53.32% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 372 | 27.15% | 72.85% |
| Indica II | 210 | 76.19% | 23.81% |
| Indica Intermediate | 202 | 51.98% | 48.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401353954 | C->T | INTERGENIC | None |