Detailed information of SNP:
|
SNP ID:
sf0401358681(Gbrowse)
Chromosome: chr04 Position: 1358681 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 75.98% | 24.02% |
| All Indica | 789 | 60.08% | 39.92% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 75.14% | 24.86% |
| Indica II | 208 | 46.63% | 53.37% |
| Indica Intermediate | 211 | 46.92% | 53.08% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401358681 | C->A | INTERGENIC | None |