Detailed information of SNP:



SNP ID: sf0401358681(Gbrowse)

Chromosome: chr04

Position: 1358681
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1407 75.98% 24.02%
All Indica789 60.08% 39.92%
All Japonica497 98.79% 1.21%
Aus66 98.48% 1.52%
Indica I370 75.14% 24.86%
Indica II208 46.63% 53.37%
Indica Intermediate211 46.92% 53.08%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0401358681 C->A INTERGENIC None