Detailed information of SNP:
|
SNP ID:
sf0401407769(Gbrowse)
Chromosome: chr04 Position: 1407769 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 97.45% | 2.55% |
| All Indica | 794 | 95.47% | 4.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401407769 | A->T | LOC_Os04g03320(LOC_Os04g03320.1) | Non-Synonymous SNP |