Detailed information of SNP:
|
SNP ID:
sf0401434636(Gbrowse)
Chromosome: chr04 Position: 1434636 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1309 | 90.30% | 9.70% |
| All Indica | 711 | 84.67% | 15.33% |
| All Japonica | 481 | 98.75% | 1.25% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 331 | 85.20% | 14.80% |
| Indica II | 198 | 84.85% | 15.15% |
| Indica Intermediate | 182 | 83.52% | 16.48% |
| Temperate Japonica | 326 | 99.08% | 0.92% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401434636 | G->A | LOC_Os04g03350(LOC_Os04g03350.1) | Non-Synonymous SNP |