Detailed information of SNP:
|
SNP ID:
sf0401468664(Gbrowse)
Chromosome: chr04 Position: 1468664 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 74.82% | 25.18% |
| All Indica | 787 | 88.18% | 11.82% |
| All Japonica | 486 | 49.59% | 50.41% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 81.74% | 18.26% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 329 | 40.12% | 59.88% |
| Tropical Japonica | 91 | 73.63% | 26.37% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401468664 | T->G | INTERGENIC | None |