Detailed information of SNP:
|
SNP ID:
sf0401483723(Gbrowse)
Chromosome: chr04 Position: 1483723 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.19% | 5.81% |
| All Indica | 797 | 99.75% | 0.25% |
| All Japonica | 492 | 86.18% | 13.82% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 330 | 80.91% | 19.09% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401483723 | G->A | LOC_Os04g03450(LOC_Os04g03450.1) | Synonymous |