Detailed information of SNP:
|
SNP ID:
sf0401498362(Gbrowse)
Chromosome: chr04 Position: 1498362 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.25% | 3.75% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401498362 | G->A | LOC_Os04g03470(LOC_Os04g03470.1) | SNPs that introduce stop codons |