Detailed information of SNP:
|
SNP ID:
sf0401500672(Gbrowse)
Chromosome: chr04 Position: 1500672 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 75.06% | 24.94% |
| All Indica | 771 | 85.08% | 14.92% |
| All Japonica | 472 | 54.66% | 45.34% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 358 | 81.56% | 18.44% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 317 | 44.79% | 55.21% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 62 | 59.68% | 40.32% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401500672 | A->G | INTERGENIC | None |