Detailed information of SNP:
|
SNP ID:
sf0401513062(Gbrowse)
Chromosome: chr04 Position: 1513062 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.65% | 3.35% |
| All Indica | 791 | 97.85% | 2.15% |
| All Japonica | 495 | 97.17% | 2.83% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401513062 | G->T | INTERGENIC | None |