Detailed information of SNP:
|
SNP ID:
sf0401574113(Gbrowse)
Chromosome: chr04 Position: 1574113 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1240 | 84.68% | 15.32% |
| All Indica | 694 | 79.39% | 20.61% |
| All Japonica | 430 | 92.56% | 7.44% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 311 | 78.14% | 21.86% |
| Indica II | 195 | 78.97% | 21.03% |
| Indica Intermediate | 188 | 81.91% | 18.09% |
| Temperate Japonica | 294 | 95.58% | 4.42% |
| Tropical Japonica | 83 | 89.16% | 10.84% |
| Japonica Intermediate | 53 | 81.13% | 18.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401574113 | G->A | LOC_Os04g03610(LOC_Os04g03610.1) | SNPs that introduce stop codons |