Detailed information of SNP:
|
SNP ID:
sf0401593317(Gbrowse)
Chromosome: chr04 Position: 1593317 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 82.21% | 17.79% |
| All Indica | 794 | 96.47% | 3.53% |
| All Japonica | 496 | 57.06% | 42.94% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 334 | 44.31% | 55.69% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401593317 | C->T | LOC_Os04g03630(LOC_Os04g03630.1) | Non-Synonymous SNP |