Detailed information of SNP:
|
SNP ID:
sf0401594483(Gbrowse)
Chromosome: chr04 Position: 1594483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 78.61% | 21.39% |
| All Indica | 794 | 68.26% | 31.74% |
| All Japonica | 494 | 96.15% | 3.85% |
| Aus | 64 | 62.50% | 37.50% |
| Indica I | 372 | 59.95% | 40.05% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 209 | 68.42% | 31.58% |
| Temperate Japonica | 333 | 94.59% | 5.41% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401594483 | C->T | LOC_Os04g03630(LOC_Os04g03630.1) | Non-Synonymous SNP |