Detailed information of SNP:
|
SNP ID:
sf0401595066(Gbrowse)
Chromosome: chr04 Position: 1595066 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1262 | 69.89% | 30.11% |
| All Indica | 682 | 59.53% | 40.47% |
| All Japonica | 479 | 83.09% | 16.91% |
| Aus | 55 | 85.45% | 14.55% |
| Indica I | 320 | 66.56% | 33.44% |
| Indica II | 187 | 37.43% | 62.57% |
| Indica Intermediate | 175 | 70.29% | 29.71% |
| Temperate Japonica | 333 | 97.90% | 2.10% |
| Tropical Japonica | 83 | 33.73% | 66.27% |
| Japonica Intermediate | 63 | 69.84% | 30.16% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 33 | 60.61% | 39.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401595066 | G->A | LOC_Os04g03630(LOC_Os04g03630.1) | Synonymous |