Detailed information of SNP:
|
SNP ID:
sf0401602146(Gbrowse)
Chromosome: chr04 Position: 1602146 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 87.52% | 12.48% |
| All Indica | 763 | 78.77% | 21.23% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 363 | 95.32% | 4.68% |
| Indica II | 199 | 51.26% | 48.74% |
| Indica Intermediate | 201 | 76.12% | 23.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401602146 | C->T | LOC_Os04g03640(LOC_Os04g03640.1) | INTRON |