Detailed information of SNP:
|
SNP ID:
sf0401603289(Gbrowse)
Chromosome: chr04 Position: 1603289 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 63.35% | 36.65% |
| All Indica | 779 | 58.92% | 41.08% |
| All Japonica | 487 | 76.80% | 23.20% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 364 | 42.03% | 57.97% |
| Indica II | 207 | 87.92% | 12.08% |
| Indica Intermediate | 208 | 59.62% | 40.38% |
| Temperate Japonica | 332 | 94.88% | 5.12% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 62 | 64.52% | 35.48% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401603289 | G->A | LOC_Os04g03640(LOC_Os04g03640.1) | INTRON |