Detailed information of SNP:
|
SNP ID:
sf0401611485(Gbrowse)
Chromosome: chr04 Position: 1611485 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 79.99% | 20.01% |
| All Indica | 797 | 82.43% | 17.57% |
| All Japonica | 491 | 75.56% | 24.44% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 332 | 70.18% | 29.82% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401611485 | A->G | LOC_Os04g03670(LOC_Os04g03670.1) | INTRON |