Detailed information of SNP:
|
SNP ID:
sf0401631291(Gbrowse)
Chromosome: chr04 Position: 1631291 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1306 | 94.18% | 5.82% |
| All Indica | 771 | 94.94% | 5.06% |
| All Japonica | 418 | 94.02% | 5.98% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 198 | 92.93% | 7.07% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 267 | 92.88% | 7.12% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401631291 | A->G | LOC_Os04g03700(LOC_Os04g03700.1) | Non-Synonymous SNP |