Detailed information of SNP:
|
SNP ID:
sf0401633486(Gbrowse)
Chromosome: chr04 Position: 1633486 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 96.38% | 3.62% |
| All Indica | 790 | 95.44% | 4.56% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401633486 | G->A | INTERGENIC | None |