Detailed information of SNP:
|
SNP ID:
sf0401639090(Gbrowse)
Chromosome: chr04 Position: 1639090 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 97.14% | 2.86% |
| All Indica | 780 | 96.03% | 3.97% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 362 | 96.96% | 3.04% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 208 | 93.27% | 6.73% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401639090 | A->G | LOC_Os04g03710(LOC_Os04g03710.1) | INTRON |