Detailed information of SNP:
|
SNP ID:
sf0401642607(Gbrowse)
Chromosome: chr04 Position: 1642607 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.29% | 44.71% |
| All Indica | 799 | 71.96% | 28.04% |
| All Japonica | 496 | 28.23% | 71.77% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 70.62% | 29.38% |
| Temperate Japonica | 335 | 21.79% | 78.21% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401642607 | T->C | LOC_Os04g03710(LOC_Os04g03710.1) | Non-Synonymous SNP |