Detailed information of SNP:
|
SNP ID:
sf0401642870(Gbrowse)
Chromosome: chr04 Position: 1642870 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 53.19% | 46.81% |
| All Indica | 797 | 71.77% | 28.23% |
| All Japonica | 494 | 23.68% | 76.32% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 374 | 92.25% | 7.75% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 211 | 69.67% | 30.33% |
| Temperate Japonica | 333 | 13.51% | 86.49% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401642870 | G->T | LOC_Os04g03710(LOC_Os04g03710.1) | Non-Synonymous SNP |