Detailed information of SNP:
|
SNP ID:
sf0401644710(Gbrowse)
Chromosome: chr04 Position: 1644710 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 80.72% | 19.28% |
| All Indica | 768 | 74.87% | 25.13% |
| All Japonica | 490 | 88.57% | 11.43% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 354 | 63.56% | 36.44% |
| Indica II | 206 | 88.83% | 11.17% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 330 | 97.88% | 2.12% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401644710 | G->C | LOC_Os04g03720(LOC_Os04g03720.1) | Non-Synonymous SNP |