Detailed information of SNP:
|
SNP ID:
sf0401647770(Gbrowse)
Chromosome: chr04 Position: 1647770 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 93.61% | 6.39% |
| All Indica | 776 | 88.92% | 11.08% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 359 | 85.52% | 14.48% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 205 | 88.78% | 11.22% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401647770 | G->A | LOC_Os04g03730(LOC_Os04g03730.1) | Synonymous |