Detailed information of SNP:
|
SNP ID:
sf0401659537(Gbrowse)
Chromosome: chr04 Position: 1659537 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.40% | 16.60% |
| All Indica | 797 | 89.84% | 10.16% |
| All Japonica | 496 | 71.57% | 28.43% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 373 | 87.94% | 12.06% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 62.28% | 37.72% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401659537 | T->C | LOC_Os04g03750(LOC_Os04g03750.1) | INTRON |