Detailed information of SNP:
|
SNP ID:
sf0401668454(Gbrowse)
Chromosome: chr04 Position: 1668454 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 90.30% | 9.70% |
| All Indica | 794 | 85.64% | 14.36% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 209 | 65.55% | 34.45% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401668454 | T->A | LOC_Os04g03750(LOC_Os04g03750.1) | INTRON |