Detailed information of SNP:
|
SNP ID:
sf0401674022(Gbrowse)
Chromosome: chr04 Position: 1674022 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 96.89% | 3.11% |
| All Indica | 779 | 96.02% | 3.98% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 51 | 80.39% | 19.61% |
| Indica I | 369 | 95.66% | 4.34% |
| Indica II | 206 | 95.15% | 4.85% |
| Indica Intermediate | 204 | 97.55% | 2.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401674022 | T->C | INTERGENIC | None |