Detailed information of SNP:
|
SNP ID:
sf0401675712(Gbrowse)
Chromosome: chr04 Position: 1675712 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 62.74% | 37.26% |
| All Indica | 772 | 48.58% | 51.42% |
| All Japonica | 490 | 90.41% | 9.59% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 358 | 39.39% | 60.61% |
| Indica II | 211 | 63.98% | 36.02% |
| Indica Intermediate | 203 | 48.77% | 51.23% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 88 | 56.82% | 43.18% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401675712 | T->C | INTERGENIC | None |