Detailed information of SNP:
|
SNP ID:
sf0401693495(Gbrowse)
Chromosome: chr04 Position: 1693495 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 82.90% | 17.10% |
| All Indica | 795 | 99.12% | 0.88% |
| All Japonica | 491 | 53.97% | 46.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 331 | 38.07% | 61.93% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401693495 | G->T | INTERGENIC | None |