Detailed information of SNP:
|
SNP ID:
sf0401697405(Gbrowse)
Chromosome: chr04 Position: 1697405 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.76% | 11.24% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 495 | 77.98% | 22.02% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 93 | 31.18% | 68.82% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401697405 | A->T | INTERGENIC | None |