Detailed information of SNP:
|
SNP ID:
sf0401697855(Gbrowse)
Chromosome: chr04 Position: 1697855 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 80.54% | 19.46% |
| All Indica | 799 | 75.47% | 24.53% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 84.00% | 16.00% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401697855 | C->T | LOC_Os04g03796(LOC_Os04g03796.3) | INTRON |
| sf0401697855 | C->T | LOC_Os04g03796(LOC_Os04g03796.1) | INTRON |
| sf0401697855 | C->T | LOC_Os04g03796(LOC_Os04g03796.4) | INTRON |