Detailed information of SNP:
|
SNP ID:
sf0401698097(Gbrowse)
Chromosome: chr04 Position: 1698097 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 82.00% | 18.00% |
| All Indica | 766 | 77.68% | 22.32% |
| All Japonica | 491 | 87.98% | 12.02% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 367 | 96.46% | 3.54% |
| Indica II | 195 | 45.13% | 54.87% |
| Indica Intermediate | 204 | 75.00% | 25.00% |
| Temperate Japonica | 331 | 83.69% | 16.31% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401698097 | A->G | LOC_Os04g03796(LOC_Os04g03796.3) | INTRON |
| sf0401698097 | A->G | LOC_Os04g03796(LOC_Os04g03796.1) | INTRON |
| sf0401698097 | A->G | LOC_Os04g03796(LOC_Os04g03796.4) | INTRON |