Detailed information of SNP:
|
SNP ID:
sf0401701883(Gbrowse)
Chromosome: chr04 Position: 1701883 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 78.63% | 21.37% |
| All Indica | 793 | 72.51% | 27.49% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 62.44% | 37.56% |
| Indica Intermediate | 206 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 83.28% | 16.72% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401701883 | A->G | LOC_Os04g03796(LOC_Os04g03796.2) | UTR_5_PRIME |
| sf0401701883 | A->G | LOC_Os04g03796(LOC_Os04g03796.1) | Non-Synonymous SNP |
| sf0401701883 | A->G | LOC_Os04g03796(LOC_Os04g03796.4) | Non-Synonymous SNP |