Detailed information of SNP:
|
SNP ID:
sf0401704430(Gbrowse)
Chromosome: chr04 Position: 1704430 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 52.29% | 47.71% |
| All Indica | 786 | 31.17% | 68.83% |
| All Japonica | 493 | 82.35% | 17.65% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 372 | 22.85% | 77.15% |
| Indica II | 209 | 43.54% | 56.46% |
| Indica Intermediate | 205 | 33.66% | 66.34% |
| Temperate Japonica | 331 | 80.97% | 19.03% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401704430 | A->G | LOC_Os04g03796(LOC_Os04g03796.2) | INTRON |
| sf0401704430 | A->G | LOC_Os04g03796(LOC_Os04g03796.1) | INTRON |