Detailed information of SNP:
|
SNP ID:
sf0401704588(Gbrowse)
Chromosome: chr04 Position: 1704588 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 54.09% | 45.91% |
| All Indica | 798 | 74.56% | 25.44% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 70.67% | 29.33% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 27.76% | 72.24% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401704588 | C->T | LOC_Os04g03796(LOC_Os04g03796.2) | INTRON |
| sf0401704588 | C->T | LOC_Os04g03796(LOC_Os04g03796.1) | INTRON |