Detailed information of SNP:
|
SNP ID:
sf0401705450(Gbrowse)
Chromosome: chr04 Position: 1705450 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1384 | 55.42% | 44.58% |
| All Indica | 778 | 78.28% | 21.72% |
| All Japonica | 486 | 22.84% | 77.16% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 370 | 88.11% | 11.89% |
| Indica II | 202 | 61.39% | 38.61% |
| Indica Intermediate | 206 | 77.18% | 22.82% |
| Temperate Japonica | 332 | 23.80% | 76.20% |
| Tropical Japonica | 89 | 20.22% | 79.78% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401705450 | A->G | LOC_Os04g03796(LOC_Os04g03796.2) | Synonymous |
| sf0401705450 | A->G | LOC_Os04g03796(LOC_Os04g03796.1) | Synonymous |