Detailed information of SNP:
|
SNP ID:
sf0401705526(Gbrowse)
Chromosome: chr04 Position: 1705526 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 56.36% | 43.64% |
| All Indica | 773 | 34.41% | 65.59% |
| All Japonica | 486 | 86.83% | 13.17% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 367 | 25.07% | 74.93% |
| Indica II | 202 | 51.98% | 48.02% |
| Indica Intermediate | 204 | 33.82% | 66.18% |
| Temperate Japonica | 326 | 89.26% | 10.74% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401705526 | G->A | LOC_Os04g03796(LOC_Os04g03796.2) | Non-Synonymous SNP |
| sf0401705526 | G->A | LOC_Os04g03796(LOC_Os04g03796.1) | Non-Synonymous SNP |