Detailed information of SNP:
|
SNP ID:
sf0401708333(Gbrowse)
Chromosome: chr04 Position: 1708333 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 67.30% | 32.70% |
| All Indica | 797 | 91.59% | 8.41% |
| All Japonica | 497 | 31.99% | 68.01% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 373 | 87.67% | 12.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401708333 | A->C | INTERGENIC | None |