Detailed information of SNP:
|
SNP ID:
sf0401709438(Gbrowse)
Chromosome: chr04 Position: 1709438 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 66.90% | 33.10% |
| All Indica | 797 | 91.22% | 8.78% |
| All Japonica | 497 | 31.59% | 68.41% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 34.33% | 65.67% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401709438 | C->T | INTERGENIC | None |