Detailed information of SNP:
|
SNP ID:
sf0401712464(Gbrowse)
Chromosome: chr04 Position: 1712464 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 79.65% | 20.35% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 494 | 53.24% | 46.76% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 60.30% | 39.70% |
| Tropical Japonica | 92 | 33.70% | 66.30% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401712464 | T->G | LOC_Os04g03810(LOC_Os04g03810.1) | INTRON |