Detailed information of SNP:
|
SNP ID:
sf0401715941(Gbrowse)
Chromosome: chr04 Position: 1715941 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 83.23% | 16.77% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 55.53% | 44.47% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 40.60% | 59.40% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401715941 | T->G | INTERGENIC | None |