Detailed information of SNP:
|
SNP ID:
sf0401718572(Gbrowse)
Chromosome: chr04 Position: 1718572 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 79.97% | 20.03% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 493 | 55.17% | 44.83% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 332 | 40.06% | 59.94% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 71.64% | 28.36% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401718572 | C->T | INTERGENIC | None |