Detailed information of SNP:
|
SNP ID:
sf0401720714(Gbrowse)
Chromosome: chr04 Position: 1720714 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.72% | 6.28% |
| All Indica | 798 | 93.36% | 6.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401720714 | G->A | LOC_Os04g03830(LOC_Os04g03830.1) | Non-Synonymous SNP |