Detailed information of SNP:



SNP ID: sf0401722901(Gbrowse)

Chromosome: chr04

Position: 1722901
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1412 73.94% 26.06%
All Indica797 89.08% 10.92%
All Japonica494 49.80% 50.20%
Aus66 72.73% 27.27%
Indica I374 91.18% 8.82%
Indica II212 94.34% 5.66%
Indica Intermediate211 80.09% 19.91%
Temperate Japonica333 32.13% 67.87%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate67 70.15% 29.85%
Group VI/Aromatic13 69.23% 30.77%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0401722901 T->G INTERGENIC None