Detailed information of SNP:
|
SNP ID:
sf0401722901(Gbrowse)
Chromosome: chr04 Position: 1722901 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.94% | 26.06% |
| All Indica | 797 | 89.08% | 10.92% |
| All Japonica | 494 | 49.80% | 50.20% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 333 | 32.13% | 67.87% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401722901 | T->G | INTERGENIC | None |