Detailed information of SNP:
|
SNP ID:
sf0401763575(Gbrowse)
Chromosome: chr04 Position: 1763575 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 71.01% | 28.99% |
| All Indica | 793 | 55.99% | 44.01% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 43.08% | 56.92% |
| Indica I | 372 | 51.88% | 48.12% |
| Indica II | 211 | 66.82% | 33.18% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401763575 | A->G | LOC_Os04g03870(LOC_Os04g03870.1) | Synonymous |