Detailed information of SNP:
|
SNP ID:
sf0401763619(Gbrowse)
Chromosome: chr04 Position: 1763619 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 70.93% | 29.07% |
| All Indica | 794 | 56.05% | 43.95% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 373 | 52.01% | 47.99% |
| Indica II | 211 | 67.30% | 32.70% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401763619 | G->C | LOC_Os04g03870(LOC_Os04g03870.1) | Non-Synonymous SNP |