Detailed information of SNP:
|
SNP ID:
sf0401772693(Gbrowse)
Chromosome: chr04 Position: 1772693 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 83.08% | 16.92% |
| All Indica | 783 | 70.75% | 29.25% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 370 | 71.08% | 28.92% |
| Indica II | 206 | 75.24% | 24.76% |
| Indica Intermediate | 207 | 65.70% | 34.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401772693 | A->T | LOC_Os04g03884(LOC_Os04g03884.1) | UTR_3_PRIME |