Detailed information of SNP:
|
SNP ID:
sf0401776986(Gbrowse)
Chromosome: chr04 Position: 1776986 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 62.68% | 37.32% |
| All Indica | 793 | 77.30% | 22.70% |
| All Japonica | 496 | 38.71% | 61.29% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 87.17% | 12.83% |
| Indica II | 210 | 66.19% | 33.81% |
| Indica Intermediate | 209 | 70.81% | 29.19% |
| Temperate Japonica | 334 | 50.60% | 49.40% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0401776986 | A->G | INTERGENIC | None |